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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
RNA microarray
27
snATAC-seq
14
ATAC-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
Assay category
Transcription
41
DNA accessibility
6
DNA methylation
DNA binding
Date released
180
June, 2019
140
May, 2022
101
May, 2020
95
August, 2021
76
February, 2023
52
February, 2021
52
May, 2021
43
March, 2020
36
July, 2019
35
October, 2019
28
November, 2019
26
August, 2017
17
November, 2018
16
January, 2021
14
September, 2018
12
November, 2020
11
May, 2023
10
April, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
March, 2019
5
September, 2017
4
October, 2022
3
September, 2020
1
August, 2018
1
August, 2022
1
December, 2018
1
March, 2023
Available data
33
fastq
11
bam
10
bed narrowPeak
9
tsv
4
bed bedgraph
2
bed bed3
2
bed bed3+
1
bigWig
Organism
52
Homo sapiens
Biosample type
35
primary cell
11
tissue
4
in vitro differentiated cells
2
cell line
Organ
8
artery
8
blood vessel
8
bone element
8
heart
8
skeleton
vasculature
6
connective tissue
6
epithelium
6
limb
6
pancreas
3
kidney
2
liver
Project
33
HPAP
19
AMP
Genome assembly (visualization)
16
hg19
10
GRCh38
Lab
33
Klaus Kaestner, Upenn
19
AMP-T2D consortium
Audit category:
27
audit script error
1
inconsistent replicate
assay_slims!
DNA binding
Transcription
assay_title!
RNA microarray
organ_slims!
vasculature
BIOSAMPLE
ASSAY
52 results
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snATAC-seq
ATAC-seq
WGBS
snDrop-seq
pCHi-C
primary cell
Langerhans cell
27
pancreatic alpha cell
6
osteoblast
1
1
tissue
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
kidney (Cortex-Medulla)
1
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in vitro differentiated cells
adipocyte
4
cell line
HepG2
1
1
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