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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
DNase-seq
3
ATAC-seq
WGBS
Assay category
DNA binding
Transcription
8
DNA accessibility
Date released
3
November, 2018
2
June, 2019
1
August, 2017
1
February, 2021
1
October, 2019
Available data
28
bed narrowPeak
27
bigWig
8
bam
7
bed bed3+
6
bigBed narrowPeak
6
fastq
5
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
2
tsv
1
bed bed3
1
hdf5
1
vcf
Organism
8
Homo sapiens
Biosample type
4
tissue
3
primary cell
1
cell line
Organ
80
kidney
75
pancreas
44
limb
42
epithelium
42
heart
35
brain
33
musculature of body
23
vasculature
21
blood vessel
18
ureter
15
connective tissue
14
artery
8
bone element
8
liver
8
skeleton
5
adipose tissue
4
eye
3
nerve
3
vein
2
spleen
Project
8
AMP
Genome assembly (visualization)
8
GRCh38
8
hg19
Lab
8
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
assay_slims!
DNA binding
Transcription
assay_title!
WGBS
BIOSAMPLE
ASSAY
8 results
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DNase-seq
ATAC-seq
tissue
liver
2
right lobe of liver
1
1
primary cell
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
hepatocyte
1
cell line
HepG2
1
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