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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ATAC-seq
Assay category
12
DNA accessibility
Date released
10
February, 2023
2
February, 2021
Available data
492
bed narrowPeak
408
bam
377
bigWig
241
bigBed narrowPeak
217
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
103
fastq
101
zippedFastqFolder
88
txt
64
xls
54
tsv
36
bed bedMethyl
36
bigBed bedMethyl
20
bedpe bed3+
19
hic
12
bed bed3
7
bed bedgraph
5
hdf5
2
ibed
1
bedpe
1
tar
1
vcf
Organism
12
Homo sapiens
Biosample type
5
in vitro differentiated cells
5
tissue
1
cell line
1
primary cell
Organ
6
connective tissue
4
bone element
4
skeleton
1
brain
1
liver
Project
12
AMP
Genome assembly (visualization)
12
hg19
2
GRCh38
Lab
12
AMP-T2D consortium
Audit category:
1
inconsistent replicate
assay_slims!
DNA binding
Transcription
audit.ERROR.category!
audit script error
month_released!
December, 2019
BIOSAMPLE
ASSAY
12 results
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ATAC-seq
in vitro differentiated cells
chondrocyte
5
tissue
acetabular part of hip bone
1
brain
1
ilium
1
ischium
1
pubis
1
cell line
HepG2
1
primary cell
osteoblast
1
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