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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
178
ATAC-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
2
DNase-seq
1
DNAme array
Assay category
Transcription
236
DNA accessibility
DNA binding
58
DNA methylation
10
3D chromatin structure
Date released
101
May, 2022
100
May, 2020
35
February, 2021
30
May, 2021
13
July, 2019
12
February, 2023
8
January, 2021
7
August, 2020
5
October, 2019
3
October, 2022
3
September, 2020
1
August, 2017
1
March, 2020
1
March, 2023
1
November, 2020
Available data
115
bam
112
bigWig
101
zippedFastqFolder
69
bed narrowPeak
67
fastq
bigBed narrowPeak
32
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
18
tsv
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
321
Homo sapiens
Biosample type
377
tissue
321
primary cell
61
cell line
55
in vitro differentiated cells
5
stem cell
Organ
112
epithelium
99
pancreas
8
blood
8
bodily fluid
6
connective tissue
5
kidney
5
vasculature
4
blood vessel
4
brain
3
liver
2
vein
1
bone element
1
bone marrow
1
eye
1
heart
1
musculature of body
Project
149
AMP
147
HPAP
24
T1D
1
ITG
Genome assembly (visualization)
82
hg19
28
GRCh38
Lab
149
AMP-T2D consortium
147
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
15
inconsistent ontology term
assay_slims!
DNA binding
Transcription
files.file_type!
bigBed narrowPeak
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
321 results
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ATAC-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
DNAme array
primary cell
pancreatic alpha cell
29
31
1
Langerhans cell
48
pancreatic beta cell
16
16
1
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
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