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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
RRBS
12
WGBS
11
Hi-C
6
ATAC-seq
2
FAIRE-seq
1
MPRA
Assay category
Transcription
27
DNA methylation
11
3D chromatin structure
8
DNA accessibility
Date released
187
June, 2019
144
February, 2021
140
May, 2022
111
February, 2023
101
May, 2020
96
August, 2021
52
May, 2021
46
March, 2020
43
July, 2019
42
October, 2019
28
November, 2019
26
August, 2017
17
November, 2018
16
January, 2021
14
September, 2018
12
November, 2020
11
May, 2023
10
April, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
March, 2019
5
September, 2017
4
October, 2022
3
September, 2020
December, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
March, 2023
Available data
23
bed bedMethyl
23
bigBed bedMethyl
20
bigWig
17
bam
7
bed narrowPeak
4
bed bed3+
4
hdf5
3
bedpe bed3+
3
cool
3
hic
2
bigBed narrowPeak
1
txt
Organism
46
Homo sapiens
Biosample type
30
tissue
16
primary cell
1
cell line
Organ
14
heart
11
epithelium
7
brain
7
vasculature
6
blood vessel
6
musculature of body
5
kidney
5
limb
5
pancreas
3
liver
2
connective tissue
1
artery
1
eye
1
pericardium
Project
44
AMP
3
HPAP
Genome assembly (visualization)
29
hg19
14
GRCh38
Lab
44
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
2
inconsistent ontology term
assay_slims!
DNA binding
Transcription
month_released!
December, 2019
BIOSAMPLE
ASSAY
47 results
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Clear Filters
RRBS
WGBS
Hi-C
ATAC-seq
FAIRE-seq
MPRA
tissue
heart left ventricle
1
4
2
gastrocnemius medialis
4
aorta
2
heart right ventricle
2
kidney
1
1
+ See 13 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
cardiac fibroblast
1
cardiac muscle cell
1
+ See 11 more…
cell line
MIN6
1
See all biosamples
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