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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
total RNA-seq
85
single cell RNA-seq
56
snATAC-seq
ATAC-seq
47
WGBS
16
pCHi-C
4
Hi-C
Assay category
273
Transcription
DNA binding
56
DNA accessibility
47
DNA methylation
4
3D chromatin structure
Date released
95
May, 2022
76
February, 2023
67
May, 2021
56
September, 2020
45
February, 2021
45
May, 2020
8
January, 2021
3
October, 2022
1
March, 2023
Available data
159
fastq
114
zippedFastqFolder
102
tsv
96
bam
96
bigWig
4
hic
3
bedpe bed3+
3
cool
Organism
396
Homo sapiens
Biosample type
396
primary cell
84
tissue
9
cell line
2
stem cell
Organ
103
epithelium
103
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
275
HPAP
AMP
120
T1D
1
ITG
Genome assembly (visualization)
99
hg19
97
GRCh38
Lab
275
Klaus Kaestner, Upenn
120
Kyle Gaulton, UCSD
1
ITG
Audit category:
30
audit script error
5
inconsistent ontology term
assay_slims!
DNA binding
assay_title!
ATAC-seq
award.project!
AMP
BIOSAMPLE
ASSAY
396 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
31
1
monocyte
53
1
exocrine cell
39
pancreatic beta cell
11
16
1
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