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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
DNA binding
138
Transcription
4
3D chromatin structure
1
DNA accessibility
Date released
84
May, 2021
22
February, 2021
15
February, 2018
9
August, 2021
8
March, 2020
4
February, 2023
4
January, 2018
4
October, 2019
2
December, 2019
1
August, 2017
1
August, 2018
Available data
132
bigWig
131
tsv
128
bam
21
fastq
7
bedpe bed3+
4
hic
2
bed bed3+
2
ibed
1
bed broadPeak
1
bed narrowPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
154
Homo sapiens
Biosample type
1467
tissue
562
primary cell
154
in vitro differentiated cells
148
cell line
7
stem cell
Organ
13
connective tissue
7
embryo
2
epithelium
1
adipose tissue
1
heart
Project
154
AMP
Genome assembly (visualization)
136
hg19
128
GRCh38
4
hg18
Lab
147
AMP-T2D consortium
5
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
98
inconsistent ontology term
2
audit script error
assay_slims!
DNA binding
assay_title!
ATAC-seq
month_released!
May, 2020
BIOSAMPLE
ASSAY
154 results
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total RNA-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
1
cardiomyocytes (cardiac muscle cell)
3
2
2
2
induced pluripotent stem cell
9
embryonic stem cell
7
1
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