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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
245
total RNA-seq
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
16
pCHi-C
10
RRBS
6
Hi-C
4
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
434
Transcription
DNA binding
61
DNA accessibility
58
DNA methylation
6
3D chromatin structure
Target of assay
3
control
Date released
95
May, 2022
76
February, 2023
70
May, 2021
56
September, 2020
48
July, 2018
47
May, 2020
46
February, 2021
43
April, 2018
27
July, 2019
27
September, 2018
8
January, 2021
6
October, 2019
5
December, 2019
4
November, 2020
3
August, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
288
bigWig
283
bam
283
fastq
258
tsv
114
zippedFastqFolder
bed bed3+
30
bed narrowPeak
30
bigBed narrowPeak
28
bed broadPeak
28
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
tar
Organism
575
Homo sapiens
Biosample type
1433
tissue
575
primary cell
152
in vitro differentiated cells
146
cell line
7
stem cell
Organ
224
epithelium
205
pancreas
17
connective tissue
11
kidney
8
blood
8
bodily fluid
6
liver
6
vasculature
5
blood vessel
5
heart
4
brain
3
musculature of body
3
vein
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
275
HPAP
179
AMP
120
T1D
1
ITG
Genome assembly (visualization)
270
hg19
253
GRCh38
Lab
275
Klaus Kaestner, Upenn
179
AMP-T2D consortium
120
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
14
inconsistent ontology term
assay_slims!
DNA binding
assay_title!
ATAC-seq
files.file_type!
bed bed3+
month_released!
September, 2017
BIOSAMPLE
ASSAY
575 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
RRBS
Hi-C
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
12
31
1
monocyte
54
1
1
pancreatic beta cell
21
12
16
1
exocrine cell
39
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