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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
901
total RNA-seq
177
DNase-seq
ATAC-seq
17
WGBS
16
small RNA-seq
6
single cell RNA-seq
4
FAIRE-seq
Assay category
923
Transcription
DNA binding
181
DNA accessibility
17
DNA methylation
Date released
444
February, 2021
163
June, 2019
143
May, 2020
116
July, 2018
93
August, 2017
58
July, 2019
38
May, 2021
19
November, 2019
16
November, 2018
12
October, 2019
7
March, 2020
6
April, 2018
6
May, 2022
Available data
1121
bam
1114
bigWig
1075
tsv
181
bed narrowPeak
181
bigBed narrowPeak
177
bed bed3+
176
bed broadPeak
176
bigBed broadPeak
157
txt
128
fastq
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
Organism
1121
Homo sapiens
Biosample type
1121
tissue
283
primary cell
128
in vitro differentiated cells
107
cell line
Organ
458
connective tissue
400
adipose tissue
290
pancreas
155
liver
71
kidney
58
bone element
46
heart
41
limb
37
brain
37
musculature of body
18
ureter
11
blood vessel
11
vasculature
6
nerve
4
artery
3
eye
3
spleen
Project
1121
AMP
Genome assembly (visualization)
1110
GRCh38
1082
hg19
Lab
1115
AMP-T2D consortium
6
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
assay_slims!
DNA binding
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
1121 results
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Clear Filters
total RNA-seq
DNase-seq
WGBS
small RNA-seq
single cell RNA-seq
FAIRE-seq
tissue
adipose tissue
381
2
islet of Langerhans
266
1
6
1
liver
147
2
1
bone tissue
58
heart
4
18
1
1
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