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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
total RNA-seq
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
DNA binding
192
Transcription
7
DNA methylation
6
DNA accessibility
4
3D chromatin structure
1
DNA sequencing
Date released
144
May, 2020
20
May, 2022
13
August, 2021
10
July, 2019
5
August, 2017
5
December, 2019
5
January, 2019
4
November, 2018
3
March, 2020
2
February, 2021
2
June, 2019
1
December, 2018
1
February, 2020
October, 2019
Available data
173
tsv
168
bigWig
167
bam
12
fastq
7
bed bed3+
5
bed broadPeak
5
bed narrowPeak
5
bigBed broadPeak
5
bigBed narrowPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
csv
1
hdf5
1
vcf
Organism
215
Homo sapiens
Biosample type
184
tissue
22
cell line
9
primary cell
Organ
574
pancreas
506
connective tissue
412
adipose tissue
282
epithelium
218
kidney
215
liver
209
heart
147
bone element
82
vasculature
79
blood vessel
63
brain
60
artery
56
musculature of body
40
limb
20
lung
18
ureter
15
embryo
10
eye
8
blood
8
bodily fluid
4
skeleton
4
spleen
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
215
AMP
Genome assembly (visualization)
172
hg19
167
GRCh38
Lab
182
AMP-T2D consortium
20
Karen Mohlke, UNC
13
Bing Ren, UCSD
assay_slims!
DNA binding
assay_title!
ATAC-seq
month_released!
October, 2019
BIOSAMPLE
ASSAY
215 results
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total RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
166
2
3
1
1
1
1
1
right lobe of liver
3
2
1
2
cell line
HepG2
14
1
2
2
2
1
primary cell
hepatocyte
5
1
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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