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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1527total RNA-seq
  • ATAC-seq
  • 369single cell RNA-seq
  • 212DNase-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 75WGBS
  • 57pCHi-C
  • 34Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 1918Transcription
  • DNA binding
  • 301DNA accessibility
  • 97DNA methylation
  • 343D chromatin structure
  • 1DNA sequencing
Target of assay
  • 8control
  • 5nucleotide modification
Date released
  • 685February, 2021
  • 200August, 2021
  • 200May, 2021
  • 191May, 2020
  • 187June, 2019
  • 168July, 2018
  • 123May, 2022
  • 110August, 2017
  • 102February, 2023
  • 102July, 2019
  • 57March, 2020
  • 56September, 2020
  • 50October, 2019
  • 49April, 2018
  • 47September, 2023
  • 27September, 2018
  • 25February, 2020
  • 22November, 2019
  • 19April, 2020
  • 18November, 2018
  • 16January, 2021
  • 15February, 2018
  • 15November, 2020
  • 10December, 2019
  • 5January, 2018
  • 5January, 2019
  • 5March, 2023
  • 4August, 2018
  • 4May, 2023
  • 4October, 2022
  • 3June, 2018
  • 2October, 2018
  • 1August, 2022
  • 1December, 2018
  • 1March, 2019
Available data
  • 1643bigWig
  • 1639bam
  • 1586tsv
  • 440fastq
  • 216bed bed3+
  • 214bed narrowPeak
  • 214bigBed narrowPeak
  • 206bed broadPeak
  • 206bigBed broadPeak
  • 158txt
  • 114zippedFastqFolder
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 8csv
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tar
  • 1vcf
Organism
  • 2521Homo sapiens
Biosample type
  • 1610tissue
  • 609primary cell
  • 154in vitro differentiated cells
  • 149cell line
  • 7stem cell
Organ
  • 576pancreas
  • 506connective tissue
  • 412adipose tissue
  • 292epithelium
  • 227kidney
  • 216liver
  • 212heart
  • 147bone element
  • 88vasculature
  • 85blood vessel
  • 64brain
  • 62artery
  • 56musculature of body
  • 48limb
  • 28eye
  • 20lung
  • 18ureter
  • 15embryo
  • 8blood
  • 8bodily fluid
  • 7nerve
  • 5vein
  • 4skeleton
  • 4spleen
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 2038AMP
  • 275HPAP
  • 145T1D
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 1647hg19
  • 1627GRCh38
  • 5hg18
Lab
  • 1910AMP-T2D consortium
  • 275Klaus Kaestner, Upenn
  • 155Kyle Gaulton, UCSD
  • 67Katalin Susztak, Upenn
  • 47KPMP
  • 20Karen Mohlke, UNC
  • 19Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 4Anna Gloyn, Oxford
  • 2Struan F.A. Grant, CHOP
  • 1ITG
Audit category:
  • 252inconsistent ontology term
  • 42audit script error
Audit category:
  • 1inconsistent assembly
assay_slims!
  • DNA binding
assay_title!
  • ATAC-seq
BIOSAMPLE
ASSAY

2529 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
MeRIP-seq
FAIRE-seq
GRO-seq
STARR-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
snDrop-seq
HiChIP
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
...and 6 more
tissue
adipose tissue38231
islet of Langerhans29261743141
liver1671231111
kidney4964136111
bone element84
primary cell
Langerhans cell8548
pancreatic alpha cell5212311
monocyte541
pancreatic beta cell2112161
exocrine cell39
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)191
cardiomyocytes (cardiac muscle cell)3222
induced pluripotent stem cell9
embryonic stem cell71
cell line
smooth muscle cell of the coronary artery52
EndoC_BH133162321
HepG2141222
H1-hESC8
EndoC-BH1
stem cell
SB Ad3.11
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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