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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ATAC-seq
17
DNase-seq
2
FAIRE-seq
Assay category
DNA binding
45
DNA accessibility
Date released
14
September, 2018
10
June, 2019
7
August, 2017
5
September, 2017
4
November, 2018
4
October, 2019
1
November, 2020
Available data
978
bam
953
bigWig
891
tsv
332
fastq
91
bed narrowPeak
80
zippedFastqFolder
45
bigBed narrowPeak
24
bed bed3+
18
bed broadPeak
16
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
8
bedpe bed3+
7
hic
6
bed bed3
6
txt
4
bed bedgraph
3
cool
2
hdf5
1
bedpe
Organism
45
Homo sapiens
Biosample type
28
primary cell
13
tissue
3
in vitro differentiated cells
1
cell line
Organ
80
kidney
40
epithelium
36
limb
33
brain
33
musculature of body
32
pancreas
30
heart
18
ureter
13
connective tissue
12
vasculature
10
blood vessel
6
liver
4
adipose tissue
4
artery
4
eye
3
vein
2
nerve
1
spleen
Project
45
AMP
Genome assembly (visualization)
42
hg19
40
GRCh38
Lab
45
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA binding
assay_title!
CRISPR genome editing followed by DNA sequencing
BIOSAMPLE
ASSAY
45 results
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ATAC-seq
DNase-seq
FAIRE-seq
primary cell
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
cardiac fibroblast
3
+ See 3 more…
tissue
body of pancreas
4
pancreas
2
1
islet of Langerhans
1
1
omental fat pad
2
adipose tissue
1
+ See 1 more…
in vitro differentiated cells
adipocyte
2
1
cell line
Panc1
1
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