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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
total RNA-seq
30
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
DNA binding
116
Transcription
31
DNA accessibility
4
3D chromatin structure
Date released
89
May, 2021
26
February, 2021
August, 2021
16
February, 2023
February, 2018
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2017
1
August, 2018
Available data
120
bigWig
113
bam
109
tsv
10
bed narrowPeak
7
bed bedgraph
7
bedpe bed3+
6
fastq
5
bed bed3
4
bed bed3+
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
160
Homo sapiens
Biosample type
1641
tissue
809
primary cell
160
in vitro differentiated cells
151
cell line
7
stem cell
Organ
26
connective tissue
3
embryo
2
epithelium
1
adipose tissue
1
heart
Project
160
AMP
Genome assembly (visualization)
142
hg19
113
GRCh38
4
hg18
Lab
147
AMP-T2D consortium
10
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
108
inconsistent ontology term
2
audit script error
assay_slims!
DNA binding
assay_title!
CRISPR genome editing followed by sgRNA sequencing
month_released!
August, 2021
February, 2018
BIOSAMPLE
ASSAY
160 results
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total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
1
1
adipocyte
5
7
1
embryonic stem cell
5
6
1
cardiomyocytes (cardiac muscle cell)
3
1
2
2
2
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