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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
102
single cell RNA-seq
57
total RNA-seq
31
DNase-seq
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
183
DNA accessibility
DNA binding
161
Transcription
11
DNA methylation
6
3D chromatin structure
Target of assay
3
control
Date released
102
May, 2020
48
July, 2018
43
April, 2018
41
September, 2018
31
July, 2019
24
June, 2019
16
May, 2021
12
February, 2023
10
October, 2019
6
August, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
1
March, 2020
1
November, 2018
Available data
271
bam
258
bigWig
168
tsv
146
fastq
69
bed narrowPeak
52
bigBed narrowPeak
32
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
362
Homo sapiens
Biosample type
1558
tissue
362
primary cell
179
in vitro differentiated cells
148
cell line
5
stem cell
Organ
162
epithelium
124
pancreas
26
connective tissue
21
kidney
14
vasculature
12
brain
11
blood vessel
10
liver
8
heart
5
vein
4
musculature of body
2
adipose tissue
2
artery
2
eye
1
pericardium
Project
362
AMP
Genome assembly (visualization)
280
hg19
222
GRCh38
Lab
362
AMP-T2D consortium
324
Klaus Kaestner, Upenn
122
Kyle Gaulton, UCSD
1
ITG
Audit category:
24
inconsistent ontology term
1
audit script error
assay_slims!
DNA binding
assay_title!
CRISPR genome editing followed by sgRNA sequencing
lab.title!
Mark McCarthy, Oxford
BIOSAMPLE
ASSAY
362 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic beta cell
7
12
10
pancreatic alpha cell
6
12
10
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
pancreatic acinar cell
5
12
4
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