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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
219
total RNA-seq
96
ATAC-seq
41
WGBS
11
snATAC-seq
9
Hi-C
5
DNase-seq
5
single cell RNA-seq
2
Capture-C
2
RRBS
2
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
226
Transcription
112
DNA accessibility
DNA binding
43
DNA methylation
9
3D chromatin structure
Date released
118
July, 2018
80
May, 2022
57
May, 2021
42
November, 2019
26
February, 2021
18
February, 2023
11
March, 2020
8
January, 2021
6
July, 2019
5
April, 2018
5
October, 2019
4
August, 2021
4
June, 2019
4
March, 2019
3
October, 2022
1
August, 2022
1
February, 2020
Available data
491
bam
462
bigWig
417
tsv
fastq
80
zippedFastqFolder
74
bed narrowPeak
32
bigBed narrowPeak
9
bed broadPeak
8
bed bed3+
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
393
Homo sapiens
Biosample type
248
tissue
88
primary cell
57
cell line
Organ
520
connective tissue
411
adipose tissue
393
pancreas
302
kidney
259
heart
226
liver
203
epithelium
159
bone element
134
vasculature
131
blood vessel
107
artery
65
brain
56
eye
56
limb
55
musculature of body
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
8
nerve
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
280
AMP
83
HPAP
30
T1D
Genome assembly (visualization)
251
hg19
240
GRCh38
Lab
277
AMP-T2D consortium
83
Klaus Kaestner, Upenn
27
Kyle Gaulton, UCSD
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
55
inconsistent ontology term
4
audit script error
Audit category:
1
inconsistent assembly
assay_slims!
DNA binding
assay_title!
CRISPR genome editing followed by sgRNA sequencing
files.file_type!
fastq
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
BIOSAMPLE
ASSAY
393 results
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total RNA-seq
ATAC-seq
WGBS
snATAC-seq
Hi-C
DNase-seq
single cell RNA-seq
Capture-C
RRBS
small RNA-seq
pCHi-C
tissue
islet of Langerhans
181
38
7
3
1
pancreas
2
4
1
2
1
1
body of pancreas
3
2
2
primary cell
pancreatic alpha cell
22
25
1
pancreatic beta cell
13
16
1
pancreatic acinar cell
4
1
3
pancreatic ductal cell
1
pancreatic stellate cell
1
cell line
EndoC_BH1
33
19
1
2
Panc1
1
1
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