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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
pCHi-C
1
FAIRE-seq
Assay category
DNA binding
37
DNA accessibility
24
Transcription
3
3D chromatin structure
Target of assay
3
control
Date released
30
June, 2019
16
July, 2019
12
February, 2020
2
March, 2020
2
November, 2018
2
October, 2019
1
February, 2023
1
October, 2017
Available data
50
bigWig
47
bam
35
bed bed3+
33
bed narrowPeak
33
bigBed narrowPeak
32
bed broadPeak
32
bigBed broadPeak
26
tsv
3
fastq
3
hdf5
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
66
Homo sapiens
Biosample type
55
tissue
11
primary cell
Organ
671
pancreas
527
connective tissue
416
adipose tissue
389
epithelium
298
kidney
251
heart
236
liver
158
bone element
132
vasculature
130
blood vessel
107
artery
66
brain
55
eye
55
limb
53
musculature of body
20
lung
18
ureter
16
skeleton
15
embryo
8
nerve
5
vein
3
spleen
2
intestine
1
adrenal gland
1
blood
1
bodily fluid
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
66
AMP
Genome assembly (visualization)
46
GRCh38
39
hg19
Lab
66
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA binding
assay_title!
CRISPRi RNA-seq
files.file_type!
bed bedMethyl
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
66 results
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DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
pCHi-C
FAIRE-seq
tissue
brain
14
1
1
frontal cortex
2
2
1
1
cerebellum (Hemisphere)
1
1
1
1
Ammon's horn
1
1
1
caudate nucleus
1
1
+ See 20 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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