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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
total RNA-seq
4
STARR-seq
3
Hi-C
1
ATAC-seq
whole genome sequencing assay
Assay category
DNA binding
10
Transcription
3
3D chromatin structure
1
DNA accessibility
Date released
16
August, 2021
2
March, 2019
Available data
10
tsv
2
bedpe bed3+
2
hic
1
bedpe
Organism
18
Homo sapiens
Biosample type
14
cell line
4
tissue
Organ
12
liver
4
pancreas
2
kidney
Project
18
AMP
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
1972
AMP-T2D consortium
324
Klaus Kaestner, Upenn
184
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
18
Bing Ren, UCSD
4
Anna Gloyn, Oxford
4
Rohit N. Kulkarni, M.D., Ph.D.
4
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
assay_slims!
DNA binding
assay_title!
Capture-C
whole genome sequencing assay
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
18 results
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total RNA-seq
STARR-seq
Hi-C
ATAC-seq
cell line
HepG2
9
2
1
HEK293T
2
tissue
islet of Langerhans
1
2
1
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