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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
464
total RNA-seq
23
ATAC-seq
6
WGBS
DNase-seq
3
pCHi-C
2
Capture-C
2
small RNA-seq
1
RNA microarray
Assay category
466
Transcription
DNA binding
23
DNA accessibility
6
DNA methylation
Date released
452
February, 2021
14
February, 2023
10
July, 2019
7
August, 2017
5
August, 2021
3
October, 2019
2
February, 2020
2
March, 2020
1
August, 2018
1
January, 2018
1
May, 2021
1
May, 2023
1
November, 2019
1
October, 2017
Available data
469
bigWig
464
bam
463
tsv
6
bed bed3+
6
bed narrowPeak
6
fastq
5
bed bed3
4
bed bedgraph
4
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
500
Homo sapiens
Biosample type
471
tissue
29
in vitro differentiated cells
primary cell
1
stem cell
Organ
501
connective tissue
444
pancreas
414
adipose tissue
225
liver
224
heart
212
kidney
158
bone element
115
blood vessel
115
vasculature
101
artery
80
epithelium
51
eye
29
brain
21
musculature of body
20
limb
20
lung
16
skeleton
15
embryo
6
nerve
4
spleen
2
intestine
2
thymus
1
adrenal gland
1
blood
1
bodily fluid
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
501
AMP
Genome assembly (visualization)
485
hg19
465
GRCh38
Lab
497
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
6
inconsistent ontology term
assay_slims!
DNA binding
assay_title!
DNase-seq
biosample_type!
primary cell
organ_slims!
small intestine
BIOSAMPLE
ASSAY
501 results
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total RNA-seq
ATAC-seq
WGBS
pCHi-C
Capture-C
small RNA-seq
RNA microarray
tissue
adipose tissue
382
3
3
1
bone tissue
58
subcutaneous adipose tissue
7
1
1
1
omental fat pad
5
1
1
subcutaneous abdominal adipose tissue
3
+ See 2 more…
in vitro differentiated cells
adipocyte
5
8
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 2 more…
stem cell
mesenchymal stem cell
1
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