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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
942
total RNA-seq
258
ATAC-seq
DNase-seq
133
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
18
WGBS
16
Hi-C
16
small RNA-seq
6
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
1091
Transcription
DNA binding
289
DNA accessibility
24
DNA methylation
16
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
143
May, 2020
120
July, 2018
August, 2017
95
February, 2023
77
July, 2019
66
May, 2022
43
October, 2019
40
May, 2021
40
November, 2019
38
March, 2020
25
February, 2020
19
April, 2020
15
May, 2023
8
January, 2021
8
October, 2017
7
November, 2018
6
April, 2018
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
987
tsv
914
bam
886
bigWig
209
bed narrowPeak
157
txt
64
xls
48
fastq
20
bed bedMethyl
20
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
4
bigBed narrowPeak
2
bed broadPeak
1
bed bed3+
1
bedpe
Organism
1537
Homo sapiens
Biosample type
1539
tissue
774
primary cell
195
in vitro differentiated cells
176
cell line
7
stem cell
Organ
464
connective tissue
406
adipose tissue
291
pancreas
197
liver
163
heart
158
bone element
157
kidney
55
blood vessel
55
vasculature
51
eye
41
artery
29
brain
20
limb
20
lung
17
musculature of body
16
skeleton
15
epithelium
6
nerve
4
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1491
AMP
29
T1D
19
LungMap
Genome assembly (visualization)
999
GRCh38
970
hg19
Lab
1274
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
9
audit script error
assay_slims!
DNA binding
assay_title!
DNase-seq
lab.title!
KPMP
month_released!
August, 2017
BIOSAMPLE
ASSAY
1539 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
adipose tissue
382
3
1
islet of Langerhans
203
68
6
7
4
3
1
4
liver
167
20
1
1
1
1
kidney
49
75
17
6
1
1
1
bone element
84
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