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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
DNA binding
24
Transcription
5
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
3
control
Date released
18
July, 2019
12
February, 2020
2
March, 2020
2
October, 2019
1
February, 2023
1
October, 2017
Available data
26
tsv
18
bigWig
15
bam
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
bed narrowPeak
1
bigBed narrowPeak
1
fastq
Organism
36
Homo sapiens
Biosample type
29
tissue
7
primary cell
Organ
720
pancreas
522
connective tissue
416
adipose tissue
370
epithelium
229
heart
228
liver
218
kidney
159
bone element
123
vasculature
122
blood vessel
103
artery
52
eye
36
brain
24
musculature of body
20
limb
20
lung
16
skeleton
15
embryo
9
blood
9
bodily fluid
6
nerve
4
spleen
3
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
36
AMP
Genome assembly (visualization)
19
hg19
14
GRCh38
Lab
36
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA binding
assay_title!
DNase-seq
month_released!
December, 2019
May, 2019
BIOSAMPLE
ASSAY
36 results
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total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
frontal cortex
2
1
1
brain
1
1
1
cerebellum (Hemisphere)
1
1
1
Ammon's horn
1
1
cerebellum
2
+ See 13 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
+ See 1 more…
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