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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
Hi-C
10
RRBS
3
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
436
Transcription
260
DNA accessibility
DNA binding
58
DNA methylation
Target of assay
3
control
Date released
147
May, 2020
134
May, 2022
88
February, 2023
85
May, 2021
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
41
September, 2018
27
July, 2019
8
January, 2021
7
August, 2020
7
October, 2019
5
August, 2017
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
367
bam
362
bigWig
315
fastq
270
tsv
153
zippedFastqFolder
69
bed narrowPeak
52
bigBed narrowPeak
30
bed bed3+
28
bed broadPeak
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
2
csv
1
bed bed3
1
tar
Organism
771
Homo sapiens
Biosample type
1678
tissue
771
primary cell
191
in vitro differentiated cells
168
cell line
7
stem cell
Organ
291
epithelium
273
pancreas
20
connective tissue
11
kidney
8
blood
8
bodily fluid
7
liver
5
heart
4
brain
4
vasculature
3
blood vessel
3
musculature of body
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
eye
1
pericardium
1
vein
Project
330
AMP
321
HPAP
120
T1D
Genome assembly (visualization)
351
hg19
301
GRCh38
Lab
328
AMP-T2D consortium
321
Klaus Kaestner, Upenn
122
Kyle Gaulton, UCSD
Audit category:
27
audit script error
26
inconsistent ontology term
assay_slims!
DNA binding
assay_title!
Hi-C
STARR-seq
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
771 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
35
12
31
pancreatic beta cell
21
23
12
16
monocyte
54
15
1
1
exocrine cell
39
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