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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
total RNA-seq
6
DNase-seq
4
single cell RNA-seq
2
ATAC-seq
2
pCHi-C
Hi-C
1
RRBS
1
small RNA-seq
Assay category
15
Transcription
DNA binding
8
DNA accessibility
1
DNA methylation
Date released
7
July, 2019
6
November, 2020
5
June, 2019
3
February, 2021
2
April, 2018
2
July, 2018
1
May, 2021
Available data
24
bam
22
bigWig
15
tsv
8
bed narrowPeak
7
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
6
bigBed narrowPeak
3
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
26
Homo sapiens
Biosample type
474
tissue
30
in vitro differentiated cells
26
primary cell
1
stem cell
Organ
307
epithelium
273
pancreas
26
connective tissue
21
kidney
10
vasculature
9
brain
9
liver
8
blood
8
bodily fluid
8
heart
7
blood vessel
4
musculature of body
3
vein
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
0
stomach
Project
25
AMP
1
T1D
Genome assembly (visualization)
24
hg19
23
GRCh38
Lab
25
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
assay_slims!
DNA binding
assay_title!
Hi-C
BIOSAMPLE
ASSAY
26 results
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total RNA-seq
DNase-seq
single cell RNA-seq
ATAC-seq
pCHi-C
RRBS
small RNA-seq
primary cell
osteoblast
5
1
2
1
cardiac fibroblast
3
1
pancreatic stellate cell
4
mesenchymal stem cell of adipose
1
1
adult endothelial progenitor cell
1
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