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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
DNA binding
37
DNA accessibility
24
Transcription
2
DNA methylation
Target of assay
3
control
Date released
30
June, 2019
15
July, 2019
12
February, 2020
2
March, 2020
2
November, 2018
2
October, 2019
1
February, 2023
1
October, 2017
Available data
47
bam
47
bigWig
33
bed narrowPeak
33
bigBed narrowPeak
32
bed bed3+
32
bed broadPeak
32
bigBed broadPeak
26
tsv
3
fastq
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
65
Homo sapiens
Biosample type
56
tissue
9
primary cell
Organ
607
pancreas
293
kidney
275
epithelium
232
liver
196
heart
75
connective tissue
69
vasculature
66
blood vessel
65
brain
56
eye
51
musculature of body
47
artery
46
limb
32
adipose tissue
20
lung
18
ureter
15
embryo
9
blood
9
bodily fluid
9
bone element
8
nerve
8
skeleton
5
spleen
3
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
65
AMP
Genome assembly (visualization)
46
GRCh38
38
hg19
Lab
65
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA binding
assay_title!
Hi-C
files.file_type!
zippedFastqFolder
month_released!
February, 2021
BIOSAMPLE
ASSAY
65 results
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DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
14
1
1
1
frontal cortex
2
2
1
1
cerebellum (Hemisphere)
1
1
1
1
Ammon's horn
1
1
1
caudate nucleus
1
1
+ See 20 more…
primary cell
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
+ See 2 more…
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