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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
total RNA-seq
5
STARR-seq
Hi-C
1
ATAC-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
DNA binding
14
Transcription
1
DNA accessibility
1
DNA sequencing
Date released
16
August, 2021
4
March, 2023
1
March, 2019
Available data
10
tsv
1
vcf
Organism
17
Homo sapiens
Biosample type
17
cell line
2
stem cell
2
tissue
Organ
12
liver
2
kidney
2
pancreas
Project
17
AMP
4
community
Genome assembly (visualization)
1
GRCh38
1
hg19
Lab
2176
AMP-T2D consortium
321
Klaus Kaestner, Upenn
189
Kyle Gaulton, UCSD
141
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
17
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_slims!
DNA binding
assay_title!
Hi-C
month_released!
March, 2020
BIOSAMPLE
ASSAY
21 results
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total RNA-seq
STARR-seq
ATAC-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
9
2
1
EndoC-BH1
1
1
HEK293T
2
Synthesized DNA
1
stem cell
SB Ad3.1
1
1
tissue
islet of Langerhans
1
1
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