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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
125
total RNA-seq
35
ATAC-seq
18
snATAC-seq
17
pCHi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
Hi-C
2
HiChIP
1
whole genome sequencing assay
Assay category
DNA binding
125
Transcription
53
DNA accessibility
1
DNA sequencing
Date released
81
May, 2021
45
May, 2020
24
May, 2022
23
February, 2023
16
August, 2021
16
January, 2021
1
March, 2019
Available data
120
bam
106
tsv
103
bigWig
24
fastq
18
bed narrowPeak
6
txt
2
bed bed3+
1
vcf
Organism
206
Homo sapiens
Biosample type
122
primary cell
54
tissue
20
cell line
10
in vitro differentiated cells
Organ
53
pancreas
12
liver
8
blood
8
bodily fluid
2
kidney
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
152
T1D
54
AMP
Genome assembly (visualization)
122
hg19
97
GRCh38
Lab
2176
AMP-T2D consortium
321
Klaus Kaestner, Upenn
189
Kyle Gaulton, UCSD
141
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
17
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
6
inconsistent ontology term
assay_slims!
DNA binding
assay_title!
Hi-C
month_released!
March, 2020
BIOSAMPLE
ASSAY
206 results
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total RNA-seq
ATAC-seq
snATAC-seq
pCHi-C
STARR-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
whole genome sequencing assay
primary cell
monocyte
53
1
peripheral blood mononuclear cell
8
CD8-positive, alpha-beta T cell
4
1
B cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
islet of Langerhans
12
30
6
pancreas
1
4
thymus
1
cell line
HepG2
9
2
1
EndoC_BH1
3
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
embryonic stem cell
5
5
See all biosamples
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