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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
DNA binding
35
DNA accessibility
9
Transcription
6
DNA methylation
Date released
33
June, 2019
6
July, 2019
4
August, 2017
3
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
41
bigWig
40
bam
34
bed bed3+
33
bed broadPeak
33
bed narrowPeak
33
bigBed broadPeak
33
bigBed narrowPeak
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
1
txt
Organism
51
Homo sapiens
Biosample type
47
tissue
4
primary cell
Organ
716
pancreas
529
connective tissue
417
adipose tissue
384
epithelium
301
kidney
256
heart
235
liver
159
bone element
129
vasculature
126
blood vessel
107
artery
65
brain
56
eye
52
limb
51
musculature of body
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
3
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
51
AMP
Genome assembly (visualization)
44
hg19
40
GRCh38
Lab
51
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_slims!
DNA binding
assay_title!
Hi-C
month_released!
August, 2018
BIOSAMPLE
ASSAY
51 results
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DNase-seq
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
1
skeletal muscle tissue
1
4
1
1
1
1
psoas muscle
2
1
forelimb muscle
1
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primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
1
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