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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
257
ATAC-seq
180
single cell RNA-seq
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
small RNA-seq
11
RRBS
6
Hi-C
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
1227
Transcription
DNA binding
286
DNA accessibility
38
DNA methylation
6
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
461
February, 2021
227
August, 2021
143
May, 2020
120
July, 2018
104
August, 2017
95
February, 2023
75
July, 2019
66
May, 2022
47
September, 2023
41
October, 2019
40
May, 2021
39
November, 2019
31
March, 2020
25
February, 2020
19
April, 2020
15
May, 2023
8
January, 2021
8
October, 2017
6
April, 2018
6
November, 2018
5
March, 2019
4
November, 2020
2
January, 2018
1
August, 2022
1
December, 2019
Available data
1185
bam
1157
bigWig
1074
tsv
389
bed narrowPeak
bigBed narrowPeak
178
bed broadPeak
177
bed bed3+
176
bigBed broadPeak
157
fastq
73
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1588
Homo sapiens
Biosample type
1589
tissue
753
primary cell
186
in vitro differentiated cells
174
cell line
7
stem cell
Organ
468
connective tissue
410
adipose tissue
376
pancreas
201
kidney
201
liver
160
heart
74
bone element
54
blood vessel
54
vasculature
51
eye
41
artery
28
brain
20
limb
20
lung
19
musculature of body
16
skeleton
14
epithelium
6
nerve
4
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1494
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1090
GRCh38
1049
hg19
Lab
1278
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
7
audit script error
4
inconsistent ontology term
assay_slims!
DNA binding
assay_title!
RNA microarray
files.file_type!
bedpe bed3+
bigBed narrowPeak
BIOSAMPLE
ASSAY
1589 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
small RNA-seq
RRBS
Hi-C
MeRIP-seq
snDrop-seq
DNase-seq
tissue
adipose tissue
382
2
3
1
islet of Langerhans
292
68
6
7
4
1
1
4
kidney
49
75
64
6
1
1
liver
167
20
1
3
1
1
1
bone tissue
58
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