Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
493
total RNA-seq
RNA microarray
14
ATAC-seq
6
single cell RNA-seq
3
snDrop-seq
2
pCHi-C
Assay category
499
Transcription
14
DNA accessibility
DNA binding
Date released
518
February, 2021
291
May, 2020
269
August, 2021
234
May, 2021
180
June, 2019
168
July, 2018
115
August, 2017
96
July, 2019
94
February, 2023
66
May, 2022
65
October, 2019
57
March, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
22
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
15
May, 2023
8
December, 2019
8
January, 2018
8
October, 2017
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
1
October, 2022
Available data
504
bam
501
tsv
494
bigWig
10
bed narrowPeak
6
csv
5
txt
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
518
Homo sapiens
Biosample type
461
tissue
28
cell line
26
in vitro differentiated cells
3
primary cell
Organ
455
connective tissue
386
adipose tissue
66
bone element
60
artery
60
blood vessel
60
heart
vasculature
26
epithelium
26
pancreas
8
kidney
8
skeleton
6
limb
3
liver
Project
518
AMP
Genome assembly (visualization)
509
hg19
503
GRCh38
Lab
518
AMP-T2D consortium
Klaus Kaestner, Upenn
Audit category:
44
inconsistent ontology term
5
audit script error
1
inconsistent replicate
assay_slims!
DNA binding
assay_title!
RNA microarray
lab.title!
Klaus Kaestner, Upenn
organ_slims!
vasculature
BIOSAMPLE
ASSAY
518 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
subcutaneous adipose tissue
2
+ See 12 more…
cell line
EndoC_BH1
26
HepG2
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
primary cell
osteoblast
1
1
1
See all biosamples
Download