Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
391
total RNA-seq
95
ATAC-seq
80
single cell RNA-seq
11
snATAC-seq
10
MeRIP-seq
10
WGBS
8
DNase-seq
8
Hi-C
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
473
Transcription
DNA binding
116
DNA accessibility
12
DNA methylation
8
3D chromatin structure
Target of assay
5
control
5
nucleotide modification
Date released
157
July, 2018
May, 2022
94
August, 2017
57
May, 2021
56
February, 2023
42
November, 2019
40
September, 2018
39
April, 2018
32
February, 2021
19
September, 2020
11
March, 2020
10
November, 2020
8
January, 2021
7
August, 2020
7
November, 2018
6
July, 2019
5
October, 2017
5
October, 2019
5
September, 2017
4
August, 2021
4
June, 2019
4
March, 2019
3
August, 2018
3
October, 2022
2
October, 2018
1
August, 2022
1
February, 2020
1
June, 2018
Available data
467
bam
462
bigWig
417
tsv
300
fastq
56
bed narrowPeak
32
bigBed narrowPeak
9
bed broadPeak
8
bed bed3+
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
3
cool
bedpe
1
hdf5
Organism
622
Homo sapiens
Biosample type
363
tissue
196
primary cell
64
cell line
Organ
623
pancreas
531
connective tissue
418
adipose tissue
315
epithelium
300
kidney
259
heart
197
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
56
eye
56
limb
55
musculature of body
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
521
AMP
72
HPAP
30
T1D
Genome assembly (visualization)
478
GRCh38
476
hg19
Lab
507
AMP-T2D consortium
72
Klaus Kaestner, Upenn
27
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
66
inconsistent ontology term
4
audit script error
Audit category:
1
inconsistent assembly
assay_slims!
DNA binding
assay_title!
STARR-seq
files.file_type!
bedpe
month_released!
May, 2022
BIOSAMPLE
ASSAY
623 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
MeRIP-seq
WGBS
DNase-seq
Hi-C
Capture-C
FAIRE-seq
RRBS
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
tissue
islet of Langerhans
272
40
6
7
4
1
2
1
1
body of pancreas
3
4
2
4
2
pancreas
2
4
2
2
1
1
1
1
primary cell
pancreatic alpha cell
52
13
12
6
1
pancreatic beta cell
21
10
12
1
pancreatic acinar cell
4
5
12
1
pancreatic ductal cell
4
4
10
pancreatic delta cell
11
+ See 4 more…
cell line
EndoC_BH1
33
19
6
1
2
1
Panc1
1
1
See all biosamples
Download