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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
ATAC-seq
55
total RNA-seq
WGBS
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
Assay category
72
DNA accessibility
55
Transcription
DNA binding
8
3D chromatin structure
6
DNA methylation
Target of assay
3
control
3
nucleotide modification
Date released
52
February, 2023
39
May, 2022
16
May, 2021
16
September, 2020
8
July, 2019
6
November, 2020
4
October, 2019
3
March, 2020
3
October, 2022
2
August, 2021
1
December, 2019
1
November, 2019
Available data
53
fastq
39
zippedFastqFolder
13
bed narrowPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
5
bigWig
4
tsv
3
cool
2
bed bed3+
2
hdf5
1
bam
1
bigBed narrowPeak
1
tar
Organism
150
Homo sapiens
Biosample type
108
primary cell
28
cell line
15
tissue
Organ
203
pancreas
151
epithelium
131
kidney
104
heart
93
bone element
63
liver
52
eye
36
connective tissue
22
brain
20
lung
17
musculature of body
17
vasculature
16
blood vessel
9
blood
9
bodily fluid
8
adipose tissue
8
skeleton
7
limb
4
artery
3
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
95
HPAP
56
AMP
Genome assembly (visualization)
210
hg19
GRCh38
Lab
95
Klaus Kaestner, Upenn
50
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
28
inconsistent ontology term
5
audit script error
assay_slims!
DNA binding
assay_title!
WGBS
assembly!
GRCh38
files.file_type!
csv
BIOSAMPLE
ASSAY
151 results
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ATAC-seq
total RNA-seq
Hi-C
MeRIP-seq
RRBS
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
FAIRE-seq
RNA microarray
primary cell
pancreatic alpha cell
22
42
1
pancreatic beta cell
13
11
1
pancreatic acinar cell
4
1
endothelial cell of umbilical vein
2
1
brain microvascular endothelial cell
1
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cell line
EndoC_BH1
18
1
6
2
1
tissue
pigmented layer of retina
12
2
renal glomerulus
1
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