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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ATAC-seq
4
DNase-seq
Assay category
DNA binding
10
DNA accessibility
Date released
4
June, 2019
4
May, 2020
1
February, 2023
1
March, 2020
Available data
153
bam
tsv
145
bigWig
85
txt
16
bed narrowPeak
7
bedpe bed3+
7
fastq
6
bed bed3+
5
hic
4
bed broadPeak
4
bigBed broadPeak
4
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
ibed
1
bed bedgraph
Organism
10
Homo sapiens
Biosample type
7
primary cell
1
cell line
1
in vitro differentiated cells
1
tissue
Organ
2
epithelium
1
connective tissue
1
heart
1
kidney
1
limb
1
musculature of body
1
pancreas
1
vasculature
Project
10
AMP
Genome assembly (visualization)
10
hg19
4
GRCh38
Lab
9
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Audit category:
10
inconsistent ontology term
assay_slims!
DNA binding
assay_title!
WGBS
files.file_type!
tsv
BIOSAMPLE
ASSAY
10 results
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ATAC-seq
DNase-seq
primary cell
central memory CD8-positive, alpha-beta T cell
2
naive B cel
2
cardiac fibroblast
1
epithelial cell of proximal tubule
1
smooth muscle cell of the brain vasculature
1
cell line
EndoC_BH1
1
in vitro differentiated cells
neuron cell of Hypothalamus (neuron)
1
tissue
muscle of leg
1
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