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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
141
single cell RNA-seq
76
snATAC-seq
60
ATAC-seq
WGBS
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
340
Transcription
136
DNA accessibility
DNA binding
4
3D chromatin structure
Date released
99
February, 2023
93
May, 2022
68
May, 2021
59
September, 2020
47
September, 2023
45
May, 2020
39
February, 2021
19
April, 2020
16
January, 2021
7
August, 2020
4
March, 2020
3
March, 2023
3
October, 2022
Available data
163
fastq
112
zippedFastqFolder
108
bigWig
98
bam
98
tsv
4
hic
3
bedpe bed3+
3
cool
Organism
499
Homo sapiens
Biosample type
398
primary cell
95
tissue
9
cell line
stem cell
Organ
135
pancreas
107
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
277
HPAP
156
T1D
47
KPMP
19
LungMap
2
community
1
ITG
Genome assembly (visualization)
109
GRCh38
101
hg19
Lab
277
Klaus Kaestner, Upenn
152
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
AMP-T2D consortium
2
Anna Gloyn, Oxford
1
ITG
Audit category:
30
audit script error
7
inconsistent ontology term
assay_slims!
DNA binding
assay_title!
WGBS
award.project!
AMP
biosample_type!
stem cell
month_released!
November, 2018
BIOSAMPLE
ASSAY
502 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
1
monocyte
53
1
exocrine cell
39
pancreatic beta cell
11
16
1
+ See 37 more…
tissue
kidney
47
islet of Langerhans
7
6
11
lung
9
10
pancreas
4
thymus
1
cell line
EndoC_BH1
2
3
2
EndoC-BH1
1
1
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