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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1024
total RNA-seq
249
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
WGBS
24
pCHi-C
18
snATAC-seq
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1220
Transcription
DNA binding
449
DNA accessibility
16
3D chromatin structure
11
DNA methylation
Target of assay
2
control
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
163
June, 2019
143
May, 2020
120
July, 2018
99
August, 2017
77
February, 2023
66
May, 2022
65
July, 2019
47
October, 2019
47
September, 2023
40
November, 2019
39
May, 2021
36
March, 2020
25
February, 2020
19
April, 2020
15
May, 2023
10
November, 2018
8
October, 2017
6
April, 2018
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1168
bam
1141
bigWig
1076
tsv
389
bed narrowPeak
184
bigBed narrowPeak
178
bed broadPeak
177
bed bed3+
176
bigBed broadPeak
157
txt
147
fastq
64
xls
11
hic
10
bedpe bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
csv
5
bed bed3
1
bedpe
Organism
1812
Homo sapiens
Biosample type
1814
tissue
642
primary cell
196
in vitro differentiated cells
168
cell line
5
stem cell
Organ
467
connective tissue
409
adipose tissue
356
pancreas
272
kidney
202
liver
182
heart
158
bone element
58
blood vessel
58
vasculature
56
brain
55
limb
54
eye
52
musculature of body
45
artery
20
lung
18
ureter
16
skeleton
15
epithelium
8
nerve
3
spleen
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
1748
AMP
47
KPMP
T1D
19
LungMap
Genome assembly (visualization)
1253
GRCh38
1226
hg19
Lab
1529
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
25
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
9
audit script error
assay_slims!
DNA binding
assay_title!
WGBS
award.project!
T1D
lab.title!
Anna Gloyn, Oxford
BIOSAMPLE
ASSAY
1814 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
3
1
islet of Langerhans
285
57
6
1
4
1
3
1
1
4
kidney
49
75
64
13
6
1
1
1
liver
167
20
1
2
1
1
1
1
bone element
84
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