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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
130
DNase-seq
27
ATAC-seq
WGBS
15
RRBS
4
FAIRE-seq
Assay category
DNA binding
161
DNA accessibility
15
DNA methylation
Date released
109
June, 2019
14
August, 2017
14
September, 2018
12
July, 2019
11
October, 2019
10
November, 2018
5
September, 2017
1
November, 2020
Available data
1704
bam
1670
bigWig
1570
tsv
484
fastq
348
bed narrowPeak
161
bigBed narrowPeak
142
bed bed3+
130
bed broadPeak
128
bigBed broadPeak
112
zippedFastqFolder
99
txt
23
bedpe bed3+
22
hic
15
bed bedMethyl
15
bigBed bedMethyl
12
bed bed3
7
bed bedgraph
5
hdf5
3
cool
3
csv
2
ibed
1
bedpe
1
tar
1
vcf
Organism
176
Homo sapiens
Biosample type
123
tissue
49
primary cell
3
in vitro differentiated cells
1
cell line
Organ
kidney
46
epithelium
36
limb
36
musculature of body
35
brain
34
pancreas
32
heart
18
ureter
14
connective tissue
13
vasculature
10
blood vessel
8
liver
5
eye
4
adipose tissue
4
artery
3
vein
2
nerve
1
pericardium
1
spleen
Project
176
AMP
Genome assembly (visualization)
160
hg19
152
GRCh38
Lab
176
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
assay_slims!
DNA binding
assay_title!
WGBS
organ_slims!
kidney
BIOSAMPLE
ASSAY
176 results
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Clear Filters
DNase-seq
ATAC-seq
RRBS
FAIRE-seq
tissue
heart
18
muscle of arm
17
brain
14
1
muscle of leg
13
body of pancreas
4
+ See 35 more…
primary cell
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
cardiac fibroblast
3
1
pancreatic ductal cell
4
+ See 14 more…
in vitro differentiated cells
adipocyte
1
2
cell line
Panc1
1
See all biosamples
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