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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
total RNA-seq
3
Hi-C
2
ATAC-seq
2
DNase-seq
2
STARR-seq
pCHi-C
1
RRBS
1
WGBS
1
whole genome sequencing assay
Assay category
DNA binding
19
Transcription
4
DNA accessibility
3
3D chromatin structure
2
DNA methylation
1
DNA sequencing
Date released
13
August, 2021
5
December, 2019
5
January, 2019
2
July, 2019
2
June, 2019
1
December, 2018
1
February, 2021
1
November, 2018
1
October, 2019
Available data
19
tsv
15
bam
14
bigWig
7
fastq
4
bed narrowPeak
3
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
2
bigBed narrowPeak
1
bed bed3
1
bedpe bed3+
1
hdf5
1
hic
1
vcf
Organism
31
Homo sapiens
Biosample type
tissue
21
cell line
10
primary cell
Organ
228
epithelium
188
pancreas
74
vasculature
71
blood vessel
69
heart
62
artery
54
connective tissue
31
liver
28
kidney
15
embryo
12
brain
9
blood
9
bodily fluid
5
vein
4
musculature of body
2
adipose tissue
2
eye
1
pericardium
Project
31
AMP
Genome assembly (visualization)
17
hg19
15
GRCh38
Lab
18
AMP-T2D consortium
13
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
assay_slims!
DNA binding
assay_title!
pCHi-C
biosample_type!
tissue
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
31 results
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total RNA-seq
Hi-C
ATAC-seq
DNase-seq
STARR-seq
RRBS
WGBS
whole genome sequencing assay
cell line
HepG2
14
2
1
2
1
1
primary cell
hepatocyte
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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