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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
189
total RNA-seq
5
WGBS
4
Hi-C
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
193
Transcription
DNA binding
7
DNA methylation
4
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Date released
143
May, 2020
20
May, 2022
13
August, 2021
10
July, 2019
5
August, 2017
5
December, 2019
5
January, 2019
2
March, 2020
1
December, 2018
1
February, 2020
1
February, 2021
1
November, 2018
1
October, 2019
Available data
190
bigWig
172
tsv
171
bam
bed narrowPeak
13
fastq
6
bed bed3+
6
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
208
Homo sapiens
Biosample type
181
tissue
20
cell line
7
primary cell
Organ
653
pancreas
509
connective tissue
410
adipose tissue
341
epithelium
208
liver
179
heart
156
kidney
150
bone element
75
vasculature
74
blood vessel
58
artery
33
brain
23
musculature of body
21
eye
19
lung
15
embryo
12
limb
9
blood
9
bodily fluid
8
skeleton
5
nerve
2
pericardium
2
spleen
2
vein
1
pituitary gland
1
skin of body
1
spinal cord
Project
208
AMP
Genome assembly (visualization)
167
hg19
163
GRCh38
Lab
175
AMP-T2D consortium
20
Karen Mohlke, UNC
13
Bing Ren, UCSD
assay_slims!
DNA binding
assay_title!
pCHi-C
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
208 results
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total RNA-seq
WGBS
Hi-C
small RNA-seq
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
3
1
1
1
1
right lobe of liver
3
1
2
1
cell line
HepG2
14
1
2
2
1
primary cell
hepatocyte
5
1
endothelial cell of hepatic sinusoid
1
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