Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
total RNA-seq
84
RNA microarray
56
ATAC-seq
9
DNase-seq
6
single cell RNA-seq
3
Hi-C
pCHi-C
1
FAIRE-seq
Assay category
124
Transcription
DNA binding
66
DNA accessibility
3
3D chromatin structure
Date released
210
February, 2021
43
February, 2023
July, 2019
7
October, 2019
6
August, 2021
5
June, 2019
3
February, 2020
3
March, 2020
Available data
138
bam
122
bigWig
120
tsv
88
txt
62
bed narrowPeak
10
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
4
bed bed3
3
hic
2
bedpe bed3+
1
tar
Organism
277
Homo sapiens
Biosample type
210
tissue
60
cell line
7
primary cell
Organ
721
pancreas
508
connective tissue
404
adipose tissue
382
epithelium
289
kidney
231
heart
226
liver
158
bone element
121
vasculature
119
blood vessel
104
artery
51
eye
51
limb
48
brain
46
musculature of body
19
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
vein
4
spleen
1
pituitary gland
1
skin of body
1
spinal cord
Project
277
AMP
Genome assembly (visualization)
172
GRCh38
144
hg19
Lab
277
AMP-T2D consortium
Audit category:
84
inconsistent ontology term
1
audit script error
assay_slims!
DNA binding
assay_title!
pCHi-C
month_released!
July, 2019
BIOSAMPLE
ASSAY
277 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
RNA microarray
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
FAIRE-seq
tissue
bone element
84
bone tissue
58
coronary artery
1
35
2
aorta
1
4
1
tibial artery
1
1
2
+ See 14 more…
cell line
smooth muscle cell of the coronary artery
52
8
primary cell
endothelial cell of umbilical vein
2
2
1
brain microvascular endothelial cell
1
kidney capillary endothelial cell
1
See all biosamples
Download