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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
total RNA-seq
31
ATAC-seq
6
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
Hi-C
1
RNA microarray
Assay category
38
Transcription
DNA binding
32
DNA accessibility
1
3D chromatin structure
Target of assay
3
control
3
nucleotide modification
Date released
26
February, 2021
22
May, 2021
15
February, 2023
6
November, 2020
4
March, 2020
3
November, 2019
2
August, 2021
2
October, 2019
1
December, 2019
Available data
40
tsv
39
bigWig
38
bam
14
bed narrowPeak
1
bedpe bed3+
1
bigBed narrowPeak
1
hic
Organism
80
Homo sapiens
Biosample type
primary cell
64
cell line
15
tissue
2
in vitro differentiated cells
Organ
504
connective tissue
452
pancreas
416
adipose tissue
281
kidney
251
heart
229
liver
158
bone element
120
blood vessel
120
vasculature
105
artery
81
epithelium
56
brain
56
limb
54
eye
53
musculature of body
20
lung
18
ureter
16
skeleton
15
embryo
8
nerve
5
spleen
2
intestine
2
thymus
1
adrenal gland
1
blood
1
bodily fluid
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
79
AMP
2
T1D
Genome assembly (visualization)
53
hg19
38
GRCh38
Lab
75
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
62
inconsistent ontology term
1
audit script error
assay_slims!
DNA binding
assay_title!
shRNA RNA-seq
biosample_type!
primary cell
month_released!
October, 2018
BIOSAMPLE
ASSAY
81 results
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total RNA-seq
ATAC-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
Hi-C
RNA microarray
cell line
EndoC_BH1
33
19
6
2
1
1
glomerular visceral epithelial cell
1
1
tissue
pigmented layer of retina
2
12
renal glomerulus
1
in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
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