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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
925
total RNA-seq
109
single cell RNA-seq
20
pCHi-C
16
small RNA-seq
10
Hi-C
3
snDrop-seq
2
RNA microarray
1
ATAC-seq
Assay category
1050
Transcription
10
3D chromatin structure
1
DNA accessibility
Date released
452
February, 2021
143
May, 2020
116
July, 2018
100
August, 2021
89
August, 2017
47
July, 2019
38
May, 2021
35
March, 2020
25
February, 2020
20
November, 2019
9
October, 2019
6
April, 2018
4
February, 2023
2
December, 2019
Available data
1185
bam
1157
bigWig
1076
tsv
389
bed narrowPeak
184
bigBed narrowPeak
178
bed broadPeak
177
bed bed3+
176
bigBed broadPeak
157
fastq
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1086
Homo sapiens
Biosample type
1086
tissue
274
primary cell
138
in vitro differentiated cells
121
cell line
4
stem cell
Organ
457
connective tissue
399
adipose tissue
278
pancreas
155
liver
114
heart
58
bone element
23
brain
15
blood vessel
15
vasculature
12
kidney
9
musculature of body
7
limb
5
eye
5
nerve
4
artery
3
epithelium
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
1086
AMP
Genome assembly (visualization)
927
hg19
917
GRCh38
Lab
1084
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
7
audit script error
3
inconsistent ontology term
assay_slims!
DNA binding
assay_title!
shRNA RNA-seq
BIOSAMPLE
ASSAY
1086 results
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total RNA-seq
single cell RNA-seq
pCHi-C
small RNA-seq
Hi-C
snDrop-seq
RNA microarray
ATAC-seq
tissue
adipose tissue
381
1
islet of Langerhans
261
6
2
1
liver
147
1
1
1
bone tissue
58
heart left ventricle
3
18
1
1
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