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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
891
total RNA-seq
175
DNase-seq
42
ATAC-seq
16
WGBS
16
small RNA-seq
6
single cell RNA-seq
4
FAIRE-seq
Assay category
913
Transcription
DNA binding
221
DNA accessibility
16
DNA methylation
Date released
444
February, 2021
163
June, 2019
143
May, 2020
116
July, 2018
95
August, 2017
63
July, 2019
38
May, 2021
20
May, 2022
19
November, 2019
16
November, 2018
9
March, 2020
8
October, 2017
8
October, 2019
6
April, 2018
2
January, 2018
Available data
1178
bam
1150
bigWig
1071
tsv
386
bed narrowPeak
182
bigBed narrowPeak
176
bed broadPeak
175
bed bed3+
174
bigBed broadPeak
157
fastq
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1150
Homo sapiens
Biosample type
1150
tissue
366
primary cell
144
in vitro differentiated cells
111
cell line
1
stem cell
Organ
462
connective tissue
404
adipose tissue
291
pancreas
176
liver
71
kidney
58
bone element
50
heart
43
limb
39
brain
38
musculature of body
18
ureter
13
blood vessel
13
vasculature
nerve
6
artery
4
spleen
3
eye
Project
1150
AMP
Genome assembly (visualization)
1121
GRCh38
1116
hg19
Lab
1129
AMP-T2D consortium
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_slims!
DNA binding
assay_title!
shRNA RNA-seq
organ_slims!
nerve
BIOSAMPLE
ASSAY
1150 results
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total RNA-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
FAIRE-seq
tissue
adipose tissue
381
2
2
islet of Langerhans
260
1
3
6
1
liver
147
2
20
1
bone tissue
58
heart
4
18
1
1
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