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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
5
RRBS
4
Hi-C
4
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
DNA binding
7
Transcription
6
DNA methylation
4
3D chromatin structure
Date released
33
June, 2019
10
July, 2019
March, 2020
4
August, 2017
2
February, 2020
2
May, 2022
1
January, 2018
Available data
39
bigWig
38
bam
34
bed bed3+
33
bed broadPeak
33
bed narrowPeak
33
bigBed broadPeak
33
bigBed narrowPeak
6
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
1
txt
Organism
52
Homo sapiens
Biosample type
48
tissue
4
primary cell
Organ
712
pancreas
529
connective tissue
417
adipose tissue
387
epithelium
300
kidney
252
heart
236
liver
159
bone element
130
vasculature
127
blood vessel
107
artery
63
brain
56
eye
56
limb
52
musculature of body
19
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
4
spleen
4
vein
2
pericardium
1
bone marrow
1
pituitary gland
1
skin of body
1
spinal cord
1
thymus
Project
52
AMP
Genome assembly (visualization)
42
hg19
38
GRCh38
Lab
52
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_slims!
DNA binding
assay_title!
shRNA RNA-seq
month_released!
March, 2020
target.investigated_as!
control
BIOSAMPLE
ASSAY
52 results
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DNase-seq
RRBS
Hi-C
total RNA-seq
small RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
1
skeletal muscle tissue
4
1
1
1
1
1
gastrocnemius medialis
4
1
forelimb muscle
1
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primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
1
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