Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
single cell RNA-seq
2
RRBS
2
pCHi-C
Assay category
DNA binding
21
Transcription
4
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Date released
14
July, 2019
12
February, 2020
2
March, 2020
2
October, 2019
1
February, 2023
1
October, 2017
Available data
47
bigWig
44
bam
35
bed bed3+
bed narrowPeak
33
bigBed narrowPeak
32
bed broadPeak
32
bigBed broadPeak
23
tsv
3
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
32
Homo sapiens
Biosample type
28
tissue
4
primary cell
Organ
574
pancreas
510
connective tissue
412
adipose tissue
271
epithelium
210
liver
151
bone element
94
kidney
89
heart
70
vasculature
69
blood vessel
56
artery
32
brain
25
eye
23
musculature of body
15
embryo
12
limb
11
lung
9
blood
9
bodily fluid
8
skeleton
5
nerve
3
spleen
2
intestine
2
pericardium
2
thymus
2
vein
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
32
AMP
Genome assembly (visualization)
15
hg19
11
GRCh38
Lab
32
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA binding
assay_title!
single cell RNA-seq
files.file_type!
bed narrowPeak
organ_slims!
adrenal gland
BIOSAMPLE
ASSAY
32 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
pCHi-C
tissue
brain
1
1
1
cerebellum (Hemisphere)
1
1
1
frontal cortex
2
1
Ammon's horn
1
1
cerebellum
2
+ See 13 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
choroid plexus epithelial cell
1
See all biosamples
Download