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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
6
WGBS
5
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
DNA binding
7
DNA accessibility
6
DNA methylation
Date released
386
February, 2021
12
July, 2019
7
August, 2017
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
November, 2019
1
October, 2017
1
October, 2019
Available data
406
bigWig
404
bam
401
tsv
7
fastq
5
bed narrowPeak
4
bigBed narrowPeak
2
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
416
Homo sapiens
Biosample type
414
tissue
2
primary cell
1
in vitro differentiated cells
Organ
606
pancreas
526
connective tissue
417
adipose tissue
322
epithelium
238
kidney
238
liver
166
heart
159
bone element
128
vasculature
125
blood vessel
105
artery
65
brain
56
eye
56
limb
56
musculature of body
18
ureter
16
skeleton
15
embryo
11
lung
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
417
AMP
Genome assembly (visualization)
406
hg19
405
GRCh38
Lab
417
AMP-T2D consortium
assay_slims!
DNA binding
assay_title!
single cell RNA-seq
month_released!
November, 2019
organ_slims!
pituitary gland
BIOSAMPLE
ASSAY
417 results
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total RNA-seq
WGBS
ATAC-seq
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
3
3
1
subcutaneous adipose tissue
7
1
1
1
omental fat pad
5
1
1
2
subcutaneous abdominal adipose tissue
3
visceral abdominal adipose tissue
3
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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