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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
260
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
small RNA-seq
11
RRBS
6
Hi-C
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1211
Transcription
DNA binding
470
DNA accessibility
38
DNA methylation
6
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
545
February, 2021
228
August, 2021
163
June, 2019
143
May, 2020
120
July, 2018
108
August, 2017
95
February, 2023
66
May, 2022
61
July, 2019
47
September, 2023
46
October, 2019
40
May, 2021
39
November, 2019
31
March, 2020
25
February, 2020
19
April, 2020
16
November, 2018
15
May, 2023
8
January, 2021
8
October, 2017
6
April, 2018
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1169
bam
1141
bigWig
1060
tsv
389
bed narrowPeak
184
bigBed narrowPeak
178
bed broadPeak
177
bed bed3+
176
bigBed broadPeak
157
fastq
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1842
Homo sapiens
Biosample type
1844
tissue
803
primary cell
189
in vitro differentiated cells
176
cell line
7
stem cell
Organ
471
connective tissue
413
adipose tissue
383
pancreas
271
kidney
202
liver
186
heart
158
bone element
59
blood vessel
59
vasculature
56
limb
54
eye
52
brain
50
musculature of body
45
artery
20
lung
18
ureter
16
skeleton
15
epithelium
8
nerve
5
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1749
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1253
GRCh38
1201
hg19
Lab
1533
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
9
audit script error
assay_slims!
DNA binding
assay_title!
small RNA-seq
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
1844 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
RRBS
Hi-C
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
3
3
1
islet of Langerhans
292
68
6
1
7
4
1
1
1
4
kidney
49
75
64
13
6
1
1
1
liver
167
20
1
2
3
1
1
bone element
84
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