Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
901
total RNA-seq
177
DNase-seq
64
ATAC-seq
17
WGBS
small RNA-seq
6
single cell RNA-seq
4
FAIRE-seq
Assay category
907
Transcription
DNA binding
245
DNA accessibility
17
DNA methylation
Date released
452
February, 2021
163
June, 2019
143
May, 2020
116
July, 2018
95
August, 2017
48
July, 2019
39
November, 2019
38
May, 2021
24
May, 2022
16
November, 2018
14
October, 2019
7
March, 2020
7
October, 2017
6
April, 2018
1
March, 2019
Available data
1169
bam
1141
bigWig
1060
tsv
389
bed narrowPeak
184
bigBed narrowPeak
178
bed broadPeak
177
bed bed3+
176
bigBed broadPeak
157
fastq
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
bedpe
Organism
1169
Homo sapiens
Biosample type
1169
tissue
365
primary cell
145
in vitro differentiated cells
117
cell line
Organ
459
connective tissue
401
adipose tissue
330
pancreas
153
liver
70
kidney
66
bone element
49
heart
49
limb
36
musculature of body
35
brain
18
ureter
14
blood vessel
14
vasculature
8
skeleton
7
nerve
6
artery
4
spleen
3
eye
Project
1169
AMP
Genome assembly (visualization)
1139
GRCh38
1127
hg19
Lab
1144
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
2
inconsistent ontology term
assay_slims!
DNA binding
assay_title!
small RNA-seq
files.file_type!
bedpe
BIOSAMPLE
ASSAY
1169 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
DNase-seq
ATAC-seq
WGBS
single cell RNA-seq
FAIRE-seq
tissue
adipose tissue
381
2
islet of Langerhans
266
1
38
6
1
liver
147
2
bone tissue
58
heart
4
18
1
+ See 66 more…
See all biosamples
Download