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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
66
ATAC-seq
total RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
106
Transcription
72
DNA accessibility
DNA binding
3
3D chromatin structure
1
DNA sequencing
Date released
192
August, 2021
156
May, 2022
143
February, 2021
112
February, 2023
56
May, 2020
47
September, 2023
46
March, 2020
43
September, 2020
39
May, 2021
27
October, 2019
26
July, 2019
16
January, 2021
14
August, 2017
14
May, 2023
10
November, 2020
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2023
4
March, 2019
4
October, 2022
2
November, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
November, 2018
1
October, 2017
1
September, 2018
Available data
98
tsv
76
bed narrowPeak
64
xls
bam
8
txt
2
bed bed3+
2
bedpe bed3+
2
bigWig
2
hic
1
vcf
Organism
191
Homo sapiens
Biosample type
179
tissue
9
cell line
4
in vitro differentiated cells
Organ
92
heart
81
kidney
6
blood vessel
6
vasculature
5
connective tissue
4
liver
3
pancreas
2
artery
2
epithelium
1
adipose tissue
Project
192
AMP
Genome assembly (visualization)
64
GRCh38
6
hg19
Lab
101
AMP-T2D consortium
79
Katalin Susztak, Upenn
8
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_slims!
DNA binding
assay_title!
total RNA-seq
award.project!
LungMap
files.file_type!
bam
BIOSAMPLE
ASSAY
192 results
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single cell RNA-seq
ATAC-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
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