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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
5
STARR-seq
3
Hi-C
1
ATAC-seq
1
whole genome sequencing assay
Assay category
DNA binding
3
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Date released
8
August, 2021
2
March, 2019
Available data
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
10
Homo sapiens
Biosample type
7
cell line
3
tissue
Organ
4
liver
3
pancreas
2
kidney
Project
10
AMP
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
1011
AMP-T2D consortium
232
Klaus Kaestner, Upenn
93
Katalin Susztak, Upenn
47
KPMP
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_slims!
DNA binding
assay_title!
total RNA-seq
award.project!
T1D
organ_slims!
blood
BIOSAMPLE
ASSAY
10 results
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STARR-seq
Hi-C
ATAC-seq
whole genome sequencing assay
cell line
HepG2
2
1
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
2
1
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