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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
260
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
24
pCHi-C
16
Hi-C
16
small RNA-seq
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
DNA binding
470
DNA accessibility
196
Transcription
37
DNA methylation
16
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
179
August, 2021
163
June, 2019
101
February, 2021
82
February, 2023
47
September, 2023
45
July, 2019
40
May, 2022
28
March, 2020
25
October, 2019
21
November, 2019
19
April, 2020
19
August, 2017
16
November, 2018
14
May, 2023
8
January, 2021
8
October, 2017
6
April, 2018
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
389
bed narrowPeak
284
bam
262
bigWig
184
bigBed narrowPeak
178
bed broadPeak
177
bed bed3+
176
bigBed broadPeak
150
tsv
98
txt
64
xls
60
fastq
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
835
Homo sapiens
Biosample type
837
tissue
562
primary cell
65
cell line
60
in vitro differentiated cells
7
stem cell
Organ
222
kidney
175
heart
105
pancreas
96
bone element
53
blood vessel
53
vasculature
49
limb
48
musculature of body
43
artery
39
brain
36
liver
35
eye
20
lung
18
adipose tissue
18
connective tissue
18
ureter
13
epithelium
12
skeleton
5
spleen
3
nerve
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
pericardium
1
pituitary gland
1
skin of body
small intestine
1
stomach
1
urinary bladder
Project
749
AMP
47
KPMP
22
T1D
19
LungMap
Genome assembly (visualization)
373
GRCh38
329
hg19
Lab
607
AMP-T2D consortium
93
Katalin Susztak, Upenn
47
KPMP
40
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
9
audit script error
assay_slims!
DNA binding
assay_title!
total RNA-seq
organ_slims!
pericardium
small intestine
BIOSAMPLE
ASSAY
837 results
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ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
kidney
75
64
13
6
1
1
1
islet of Langerhans
68
6
1
7
4
3
1
1
4
bone element
84
coronary artery
36
2
heart left ventricle
2
18
3
4
1
1
1
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