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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
3
pCHi-C
3
small RNA-seq
2
Hi-C
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
DNA binding
29
DNA accessibility
7
DNA methylation
4
Transcription
2
3D chromatin structure
1
DNA sequencing
Date released
20
May, 2022
6
August, 2017
6
July, 2019
4
November, 2018
3
August, 2021
3
February, 2021
2
June, 2019
1
December, 2018
1
March, 2020
1
May, 2020
1
October, 2019
Available data
31
bigWig
28
bed narrowPeak
12
bam
8
fastq
7
bed bed3+
6
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
5
tsv
3
bed bedMethyl
3
bigBed bedMethyl
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
48
Homo sapiens
Biosample type
35
tissue
8
cell line
5
primary cell
Organ
314
pancreas
253
epithelium
242
kidney
184
heart
97
bone element
71
vasculature
68
blood vessel
54
connective tissue
51
artery
51
brain
49
limb
49
musculature of body
48
liver
37
eye
20
lung
19
adipose tissue
18
ureter
12
skeleton
9
blood
9
bodily fluid
5
spleen
4
vein
3
nerve
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
48
AMP
Genome assembly (visualization)
35
hg19
12
GRCh38
Lab
25
AMP-T2D consortium
20
Karen Mohlke, UNC
3
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
assay_slims!
DNA binding
assay_title!
total RNA-seq
files.file_type!
bedpe bed3+
month_released!
November, 2020
BIOSAMPLE
ASSAY
48 results
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Clear Filters
ATAC-seq
DNase-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
20
2
3
1
1
1
1
right lobe of liver
1
2
1
2
cell line
HepG2
1
1
2
1
2
1
primary cell
hepatocyte
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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