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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
pCHi-C
3
single cell RNA-seq
2
RRBS
1
FAIRE-seq
Assay category
DNA binding
37
DNA accessibility
7
Transcription
2
DNA methylation
Target of assay
3
control
Date released
30
June, 2019
11
July, 2019
3
March, 2020
2
November, 2018
1
February, 2023
1
October, 2017
1
October, 2019
Available data
45
bigWig
42
bam
35
bed bed3+
33
bed narrowPeak
33
bigBed narrowPeak
32
bed broadPeak
32
bigBed broadPeak
10
tsv
3
fastq
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
49
Homo sapiens
Biosample type
40
tissue
9
primary cell
Organ
330
pancreas
262
epithelium
242
kidney
187
heart
97
bone element
71
vasculature
68
blood vessel
56
connective tissue
51
artery
51
musculature of body
49
limb
49
liver
48
brain
37
eye
20
adipose tissue
20
lung
18
ureter
12
skeleton
9
blood
9
bodily fluid
5
spleen
5
vein
3
nerve
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
49
AMP
Genome assembly (visualization)
41
GRCh38
33
hg19
Lab
49
AMP-T2D consortium
assay_slims!
DNA binding
assay_title!
total RNA-seq
files.file_type!
hdf5
BIOSAMPLE
ASSAY
49 results
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DNase-seq
ATAC-seq
small RNA-seq
pCHi-C
single cell RNA-seq
RRBS
FAIRE-seq
tissue
brain
14
1
1
frontal cortex
2
1
1
cerebellum (Hemisphere)
1
1
1
Ammon's horn
1
1
adrenal gland
1
+ See 14 more…
primary cell
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
+ See 2 more…
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